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2007 - 20096
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Subject: Microbiology × End date: 2009 × Start date: 2007 × Type: Thesis ×
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Now showing 1 - 6 of 6
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    ThesisItemOpen Access
    Molecular characterization of the Acetobacter diazotrophicus species, isolated from native sugarcane varieties of hilly areas of Uttarakhand
    (G.B. Pant University of Agriculture and Technology, Pantnagar - 263145 (Uttarakhand), 2009-07) Singh, Digar; Sharma, Anita
    Seven endophytic bacterial isolates were recovered from native sugarcane varities from hilly areas namely Berinag, Champawat and Didihat of Uttarakhand state. All the isolates along with two standard cultures – Azospirillum brasilense and Gluconoacetobacter diazotrophicus , were tested for their morphological , biochemical and molecular characterizations .All the isolates were found gram negative, rod shaped showing morphological similarity with the standard cultures. Their PGPR properties were also assessed, Bacterial isolates, Rt.Bn. and St.Bn. were IAA producing. Except St.Bn, all the isolates solubilized insoluble phosphate and produced Siderophore except Rt.Bn. Molecular characterization of the isolates was done by ARDRA profiling using four restriction enzymes, Alu I, Msp I, Hae III and Mnl I. Cluster analysis using UPGMA programme grouped the isolates as per their similarity of geographical distribution, showing insignificant similarity with the standards used. Multiple bands of nif H amplicon were observed in all the isolates (except RtChI and StCh) indicating their nitrogen fixing character.
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    ThesisItemOpen Access
    Nodulation efficacy and characterization of rhizobial isolates from Macrotyloma uniflorum (Lam.) Verdc. and Lens culinaris Medik.
    (G.B. Pant University of Agriculture and Technology, Pantnagar - 263145 (Uttarakhand), 2009-07) Agrawal, Komal; Sahgal, Manvika
    Biological nitrogen fixation (BNF) is an important attribute of symbiotic association of legume host with rhizobia. To achieve maximum BNF out of any legume rhizobia association it is necessary to assess nodulation and growth promotory potential of rhizobia. Further characterization of rhizoba is must before they are available for field application. Lens culinaris and Macrotyloma uniflorum are widely cultivated in Uttarakhand as pulse and forage crops. Thirteen rhizobial isolates (five from L.culinaris & eight from M. uniflorum) were assessed for nodulation, nitrogen fixation ability and growth efficacy on homologous host and heterologous host (Glycine max). These isolates were further characterized on the basis of cultural, biochemical and DNA fingerprinting techniques. Plate assays were performed for phosphorous solubilization and siderophore production. All five isolates from nodulated L.culinaris variety VL-507 but not G.max variety VL-63. Based on nodulation potential M.uniflorum isolates were placed in two groups, one (GR5, GR6, GR7, GR8) which nodulated M.uniflorum variety VLG-8 and second (GR1, GR2, GR3, GR4) which nodulated G.max variety VL-63. All L. culinaris isolates were fast growing with generation time in the range 1.95-2.25h and produced acid on bromothymol blue indicator plates. M.uniflorum isolates were placed in two groups based on generation time, fast growing (generation time 1.97-2.01h) and slow growing (generation time 6.80-7.046h).UPGMA dendrogram based on ARDRA of 16S with Alu I, Msp I & TaqI revealed that five L.culinaris isolates were genetically diverse and represented by three rDNA types. None of the rDNA type was related to Rhizobium leguminosarum bv. trifolii strain RCl2 39. M.uniflorum isolates were placed in two clusters none of the cluster were related to Bradyrhizobium elkanii strain USDA 76 & Bradyrhizobium japonicum strain USDA 06. Majority of the isolates were positive for solubilization of phosphorous and few isolates (GR1, GR3, GR5 and GR6) were positive for siderophore production.
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    ThesisItemOpen Access
    Biodegradation of chlorinated hydrocarbons using microorganisms of industrial contaminated sites
    (G.B. Pant University of Agriculture and Technology, Pantnagar - 263145 (Uttarakhand), 2007-07) Singh, Malook; Sharma, Anita
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    ThesisItemOpen Access
    Biodegradation of chlorinated hydrocarbons using microorganisms of Industrial contaminated sites
    (G.B. Pant University of Agriculture and Technology, Pantnagar - 263145 (Uttarakhand), 2007-07) Singh, Malook; Sharma, Anita
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    ThesisItemOpen Access
    Characterization and conservation of bacterial gene pool for biodegradation of low and high density polyethylene
    (G.B. Pant University of Agriculture and Technology, Pantnagar - 263145 (Uttarakhand), 2008-01) Satlewal, Alok; Goel, Reeta
    Screening of 78 bacterial isolates led to the selection of 13 different bacteria capable of utilizing polyethylene and its derivatives as the sole carbon source. Employing these, 5 consortia were developed indigenously and in-vitro/in-situ biodegradation experiments were carried out. Degraded samples were recovered and comparatively analyzed by FTIR, simultaneous DTA-DTG-TG and scanning electron microscopic analysis. Furthermore, 16s-rDNA sequencing was done for the identification and molecular characterization of the selected strains. Results have indicated that the mesophilic consortium, comprising of Microbacterium sp., Pseudomonas putida and Bacterium Te 68R, was showing highest biodegradation amongst the others. Starch impregnation had also increased the biodegradation up to 13% with respect to the untreated LDPE film for over 21 days. Determination of dry weight loss further supported these results. Thus, it could be concluded that relatively inert polyethylene could be degraded if proper consortium is employed.
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    ThesisItemOpen Access
    Cloning and characterization of Outer Membrane Protein(s) of Pasteurella multocida serotype B:2 (P 52)
    (G.B. Pant University of Agriculture and Technology, Pantnagar - 263145 (Uttarakhand), 2008-04) Yadav, Archana; Sharma, Anita
    Pasteurella multocida serotype B:2 is a causative agent of Haemorrhagic septicaemia (HS), a fatal disease of cattle and buffaloes. Formalin inactivated whole cell bacterin is frequently used to prepare vaccines in India against HS. This vaccine has several limitations such as short term immunity, poor syringibility and production problem. To overcome from these problems there is an urgent need of search of a conserved immunogenic protein as vaccine candidate. Outer membrane proteins of P. multocida are reported to be immunogenic and protective. SDS-PAGE analysis of outer membrane proteins of vaccine strain P52 revealed the presence of eight polypeptides with molecular weight ranging from 16 to 87 kDa. Antiserum raised against whole cell antigen showed positive result by agar gel immunodiffusion test. Western blot analysis revealed the presence of seven immunodominant outer membrane proteins. Out of seven, omp87 and omp34 were selected as potent antigens for further study. Primers sets were designed from available sequences in NCBI Gene Bank. Both genes (omp87 and omp34) were amplified using DNA as template by PCR. The amplified fragments were cloned in pGEMT-Easy vector. After sequencing, size of the cloned omp87 gene was assessed and found to be 2121 bp accounting for 707 amino acid residues and size of omp34 was 942 bp accounting for 313 amino acid residues. Both the sequences were analysed using online bioinformatics tools (ExPASY server). On comparison of nucleotide sequence, omp87 showed 94.8% similarity with serotype A:1 while homology at amino acid level was 95.2%. Similarly at nucleotide level 98.3% and at amino acid level 97.5% similarity has been observed in omp34. The sequences were submitted to NCBI Gene Bank and accession number EU570212 and EU162755 were obtained for omp87 and omp34 respectively. On phylogenetic analysis it was found that omp34 of serotype B:2 clustered with serotype 3,4. Probable secondary structures and number of transmembrane helices were also predicted.