Molecular dissection of quantitative trait locus in relation to drought tolerance in rice
| dc.contributor.advisor | Sharma, V.K. | |
| dc.contributor.author | Kumar, Pankaj | |
| dc.date.accessioned | 2020-02-04T10:42:15Z | |
| dc.date.available | 2020-02-04T10:42:15Z | |
| dc.date.issued | 2019 | |
| dc.description.abstract | Thirty-one genotypes of rice were evaluated for various morpho-physiological characters and to study the microsatellite markers based polymorphism for their characterization and genetic diversity among these rice genotypes. Identification of putative gene within QTL (qDTY1.1) and their expression profiling for enhance the drought tolerance. Experimental materials were estimated in randomized block design with three replications during two consecutive years. Molecular characterization was done of the genomic DNA using a set of 23 microsatellite primer pairs. Gene expression response of drought tolerant (Nagina22 and Sahbhagi dhan) and drought sensitive (IR64) rice genotypes to 15 days of drought stress in reproductive stage. Statistical methods and parameters used for deriving inference were analysis of variance, range, mean values, pooled analysis, relative mean performance, and drought tolerance indices. An analysis of variance revealed significant differences among the genotypes for all the characters evaluated during present study. On the basis of the relative mean performance of 15 genotypes, namely, Sahbhagi, Nagina22, MTU1010, Silhatidhan, RAU1417-11-2, Rajendra Bhagwati, RAU1415-7-1, Anandidhan, Rajendra Nilam, Aus257, IR7343-71-1, Chengari2, Kali-Aus, Dangar and Dular out of 31 genotypes were appeared to be relatively more drought tolerant than other genotypes under evaluation. Four tolerance indices viz. TOL, SSI, DTE and STI were used. On the basis of stress tolerance level, stress susceptible index, stress tolerance index and drought tolerance efficiency, 18 genotypes, namely, IR7343-71-1, Chengari2, Aus257, MTU1010, Dangar, Anandidhan, Silhatidhan, Dular, Kali-Aus, Nagina22, Sahbhagidhan, Rasi, Vandana, R.Nilam, R.Bhagwati, RAU1421-12-4, RAU1417-11-2 and RAU1415-7-1 out of 31 genotypes were identified as relatively more tolerant to drought stress. A total 179 and 73 unique allelic variants were detected among the eighteen rice genotypes with an average of 7.8 alleles per primer. The primers RM 5359, RM 7025, RM 10772 and RM 11008, appeared to be highly polymorphic and comparatively more informative primers. Analysis of divergence pattern based on microsatellite markers allowed differentiation and classification of rice genotypes into two groups. The first multi-genotypic group consisted of ten genotypes, namely, IR7343-71-1, Chengar2, Aus257, MTU1010, Dangar, Anandidhan, Silhatidhan, Dular, Kali-Aus and Nagina22 whereas the second multi-genotypic group consisted of eight genotypes, namely, RAU1401-18-5, RAU1428-54-5, RAU1421-15-7, RAU1421-12-4, RAU1417-9-3, Sahbhagidhan, RAU1397-18-7 and Rasi. The magnitude of similarity coefficient between Anandidhan and Dangar (0.739) was found to be the maximum which indicating that these were more closely related. A set of microsatellite markers used for molecular characterization in the present study showed very high degree of efficiency in discrimination of genotypes in relation to drought tolerance. In this study we have identified 73 genes within QTL (qDTY1.1) using sequence information available in rice genome database and bioinformatics tools. The expression of identified genes were analysed. Our studies showed that two genes namely LOC_OS01g66520 and LOC_01g 66170 were upregulated consistently in the time point after drought imposed. Most of the genes were in downregulated. | en_US |
| dc.identifier.uri | http://krishikosh.egranth.ac.in/handle/1/5810142458 | |
| dc.keywords | Plant, Grain, Rice, Breeding, Genetics, Sahbhagi, Nagina22, MTU1010, Silhatidhan, RAU1417-11-2, Rajendra Bhagwati, RAU1415-7-1, Anandidhan, Rajendra Nilam, Aus257, IR7343-71-1, Chengari2, Kali-Aus, Dangar, Dular | en_US |
| dc.language.iso | en | en_US |
| dc.publisher | DRPCAU, Pusa, Samastipur | en_US |
| dc.sub | Agricultural Biotechnology | en_US |
| dc.subject | null | en_US |
| dc.theme | Molecular dissection of quantitative trait locus in relation to drought tolerance in rice | en_US |
| dc.these.type | Ph.D | en_US |
| dc.title | Molecular dissection of quantitative trait locus in relation to drought tolerance in rice | en_US |
| dc.type | Thesis | en_US |