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Kerala Agricultural University, Thrissur
The history of agricultural education in Kerala can be traced back to the year 1896 when a scheme was evolved in the erstwhile Travancore State to train a few young men in scientific agriculture at the Demonstration Farm, Karamana, Thiruvananthapuram, presently, the Cropping Systems Research Centre under Kerala Agricultural University. Agriculture was introduced as an optional subject in the middle school classes in the State in 1922 when an Agricultural Middle School was started at Aluva, Ernakulam District. The popularity and usefulness of this school led to the starting of similar institutions at Kottarakkara and Konni in 1928 and 1931 respectively.
Agriculture was later introduced as an optional subject for Intermediate Course in 1953. In 1955, the erstwhile Government of Travancore-Cochin started the Agricultural College and Research Institute at Vellayani, Thiruvananthapuram and the College of Veterinary and Animal Sciences at Mannuthy, Thrissur for imparting higher education in agricultural and veterinary sciences, respectively. These institutions were brought under the direct administrative control of the Department of Agriculture and the Department of Animal Husbandry, respectively. With the formation of Kerala State in 1956, these two colleges were affiliated to the University of Kerala. The post-graduate programmes leading to M.Sc. (Ag), M.V.Sc. and Ph.D. degrees were started in 1961, 1962 and 1965 respectively.
On the recommendation of the Second National Education Commission (1964-66) headed by Dr. D.S. Kothari, the then Chairman of the University Grants Commission, one Agricultural University in each State was established. The State Agricultural Universities (SAUs) were established in India as an integral part of the National Agricultural Research System to give the much needed impetus to Agriculture Education and Research in the Country. As a result the Kerala Agricultural University (KAU) was established on 24th February 1971 by virtue of the Act 33 of 1971 and started functioning on 1st February 1972. The Kerala Agricultural University is the 15th in the series of the SAUs.
In accordance with the provisions of KAU Act of 1971, the Agricultural College and Research Institute at Vellayani, and the College of Veterinary and Animal Sciences, Mannuthy, were brought under the Kerala Agricultural University. In addition, twenty one agricultural and animal husbandry research stations were also transferred to the KAU for taking up research and extension programmes on various crops, animals, birds, etc.
During 2011, Kerala Agricultural University was trifurcated into Kerala Veterinary and Animal Sciences University (KVASU), Kerala University of Fisheries and Ocean Studies (KUFOS) and Kerala Agricultural University (KAU).
Now the University has seven colleges (four Agriculture, one Agricultural Engineering, one Forestry, one Co-operation Banking & Management), six RARSs, seven KVKs, 15 Research Stations and 16 Research and Extension Units under the faculties of Agriculture, Agricultural Engineering and Forestry. In addition, one Academy on Climate Change Adaptation and one Institute of Agricultural Technology offering M.Sc. (Integrated) Climate Change Adaptation and Diploma in Agricultural Sciences respectively are also functioning in Kerala Agricultural University.
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ThesisItem Open Access Genetic polymorphism of major histocompatibility complex class II genes(Department of Animal Breeding, Genetics and Biostatistics, College of Veterinary and Animal Sciences, Mannuthy, 2010) Remya John, v; KAU; Raghavan, K CThesisItem Open Access Beta lactoglobulin polymorphism in goats of Kerala(Department of Animal Breeding, Genetics and Biostatistics, College of Veterinary and Animal Sciences, Mannuthy, 2010) Sudina, K; KAU; Bindu, K.AΒeta-lactoglobulin gene polymorphism and its association with various milk production traits were investigated in DNA samples isolated from blood of 20 Malabari, 25 Attappady black 30 crossbred goats of University goat farm and 45 Malabari goats from the native tract of Malabari breed. Study was conducted by PCR-RFLP using Sac II restriction endonuclease. Digestion of the amplified PCR product with Sac II restriction endonuclease revealed three genotypes (S1S1, S1S2 and S2S2) in Malabari, Attappady black and crossbred goats, indicating the presence of S1 (349 and 77 bp fragments) and S2 (426 bp fragment) alleles. The S1/S2 allele frequencies were 0.37/0.63, 0.34/0.66 and 0.18/0.82, respectively in Malabari, Attappady black and crossbred goats. The genotypes of β-LG/Sac II polymorphism were distributed according to Hardy-Weinberg equilibrium with frequencies 0.04 (S1S1), 0.60 (S1S2) and 0.36 (S2S2) in Attappady black and 0.10 (S1S1), 0.17 (S1S2) and 0.73 (S2S2) in crossbred goats under study. But the Malabari goat population under study with genotype frequencies 0.14 (S1S1), 0.46 (S1S2) and 0.40 (S2S2), was found to violate H-W equilibrium. So this population was further classified and genotypic frequencies of subpopulations like Tellicherry (0.14, 0.50, 0.36), Badagara (0.2, 0.25, 0.55) and University farm (0.09, 0.61, 0.30) populations were in Hardy-Weinberg equilibrium. From the present study a significant association could be detected between β-LG polymorphism and peak milk yield in Malabari breed but not in other groups. Malabari goats carrying S2 allele showed a significantly higher average (p<0.05) (420±74.24 ml and 501.79±46.47 ml) compared to animals homozygous for S1 allele (250±13.36 ml). A statistically significant association could not be established between β-LG polymorphism and other milk production traits. So the introduction of this polymorphism can complement current selection programme.ThesisItem Open Access Cloning and sequence analysis of the growth hormone gene in Indian elephants(Department of Animal Breeding, Genetics and Biostatistics, College of Veterinary and Animal Sciences, Mannuthy, 2009) Bhosale, R A; KAU; Aravindakshan, T VThe study was undertaken with the objectives of cloning and sequence analysis of the growth hormone gene of the Indian elephants. The growth hormone is a peptide hormone produced in the anterior pituitory. It stimulates the growth of vertebates. It is a protein hormone of about 190 amino acids, synthesized and secreted by cells called somatotrophs. Growth hormone is a major participant in the control of several complex physiologic processes, including growth and metabolism and it is also of considerable interest as a drug used in both humans and animals. The genomic DNA was isolated from blood samples and a 1712 bp fragment of the entire transcriptional unit of the GH was amplified by PCR using synthetic oligonucleotide primer pair designed based on the 5′ and 3′ flanking sequences of goat growth hormone gene. The gel purified PCR product was ligated in to the pGEM®-T Easy cloning vector and was transformed by giving heat shock to competent E. coli cells prepared by CaCl2 treatment. The recombinant clones among the transformed cells were identified by Blue–White Screening and the recombinant plasmid carrying the insert gene was isolated from the white clones by a modified SDS-alkaline lysis method. The 1.712 kb GH gene insert in the vector was sequenced by the dideoxynucleotide sequencing method with primer walking using an automated DNA sequencer. The nucleotide sequence showed 75 to 96 per cent homology with pig and 77 to 95 per cent with that of Dolphin GH genes, respectively. The exon-intron boundaries in the porcine gene occur at the codons of the amino acid residues, Gly-4 (intron 1), Phe-57 (intron 2), Ser-96 (intron 3) and Arg-150 (intron 4). The all four residues are conserved in both species and also in African elephants. This strict homology in the sites of insertion of introns suggests that the exon-intron organization of these genes was established before the divergence of these species. The positions of the exon-intron boundaries are also conserved as evidenced from similar sizes of the exons. Evidence for some homology was also seen in intron 1, which showed maximum 84 per cent similarity with giraffe. In contrast, intron 2, 3 and 4 showed no significant similarity both in length and in sequence with other animal species. The Indian elephant GH gene has an open reading frame of 648 nucleotides encoding a signal peptide of 26 amino acid residues and a mature protein of 190 amino acid residues with both NH2- and COOH- terminal phenylalanine. Alignment of this sequence with African elephant counterpart showed that 189 amino acid residues are identical with only one variant while, with pig sequence it showed 186 identical residues with four variants. The predicted secondary structure showed that the larger α-helical lobe is formed by four sections of the polypeptide chain (residues 3-34, 47-80, 110-126 and 148-172) while the smaller lobe, which encompasses a small antiparallel beta-sheet and a small irregular structure formed the remaining structure of the polypeptide chain. The predicted tertiary structure of the Indian elephant GH showed high homology with the human GH structures. Overall, the structures of Indian elephant GH gene was found to be very similar to that of African elephant and porcine reflecting their high degree of amino acid sequence identity (99 – 97 per cent).ThesisItem Open Access Evaluation of lactation milk yield and polymorphism of alpha-lactalabumin gene in crossbred cattle of kerala(Department of Animal Breeding and Genetics, College of Veterinary and Animal Sciences, Mannuthy, 2007) Reshmi, R Chandran; KAU; Stephen, MathewThe present study was carried out to assess the milk yield of crossbred cattle of Kerala by studying four different zones of the state viz. northern, southern, central and highlands and to analyse the association of α-lactalbumin gene polymorphism with milk production of crossbred cattle in Kerala. One day milk yield of 500 animals from each zone, at a lactation stage of 7-13 fortnights after calving was recorded. From this one-day milk yield 305-day milk yield of crossbred cattle was predicted using the formulae given by Iype (1991). The predicted lactation milk yield was used for estimating average milk yield of crossbred cattle in Kerala. The overall least squares mean of 305-day milk yield was 2351 ± 28.9 kg. Least squares analysis of variance has shown that different zones and parity exerted significant effect on 305-day milk yield (P ≤ 0.05). The highest least squares means for 305-day milk yield was in southern zone and the lowest was in central zone. The least squares mean for 305-day milk yield according to parity was highest in second parity, followed by third parity and the lowest was in fifth parity. Genomic DNA samples isolated from 25 crossbred cows selected at random from each zone was subjected for PCR-RFLP of α-lactalbumin gene at two different specific loci. On successful amplification the expected 166 bp and 429 bp fragments were obtained. Digestion of 166 bp amplified product with Mnl1 enzyme revealed similar pattern of digestion for all animals studied, indicating the absence of α-LA/Mnl1 (+) in the population. Restriction of 429 bp amplified product with Bsp12861 enzyme revealed two digestion patterns (indicating the presence of two α-LA/Bsp12861 alleles). The gene frequencies of α-LA/Bsp12861 (+) and (-) alleles were 0.08 and 0.92 respectively. In the crossbred population studied, none of the animal showed α-LA/Bsp12861 (+/+) genotype. The average milk yield of 79 α-LA/Bsp12861 (+/+) genotypes was 2779 kg and that of 16 α-LA/Bsp12861 (+/+) genotypes was only 2364 kg. However, the difference was statistically non-significant. It is suggested to conduct further research in large samples to confirm the findings and to identify other polymorphic loci associated with milk yield.ThesisItem Open Access Evaluation and comparison of polymorphism of beta casein gene in vechur and crossbred cattle of Kerala(Department of Animal Breeding, Genetics and Biostatistics, College of Veterinary and Animal Sciences, Mannuthy, 2010) Muhammed, E M; KAU; Stephen MathewBeta casein (β-CN) is the major milk protein which imparts biological, technological and physical properties to the milk. Recently, the polymorphism of the gene at codon 67 has attracted much public health attention. A single nucleotide polymorphism (SNP) from CCT to CAT leads to an amino acid change in the mature protein from proline to histidine. Among the twelve β-CN variants identified A1 and A2 are the common types and others are very rare. A1 variant has histidine at position 67 of the amino acid sequence while A2 possess proline at this position. This single amino acid change causes the release of bioactive peptides upon gastro intestinal digestion. Morphine like opioid beta casomorphine-7 (BCM-7) thus released from A1 milk is reported to cause various illness like diabetes mellitus, heart diseases, atherosclerosis, schizophrenia and sudden infant death syndrome (SIDS). The original variant A2 does not produce BCM-7 and thus is safe for human consumption. The major taurine milch breeds such as Holstein Friesian and Ayrshire have a high frequency of A1 allele where as Channel Island breeds such as Guernsey and Jersey have more of A2 allele. It is also interesting to note that most of the Indian breeds of animals have only β-CN A2 allele. The present study was undertaken to characterise the β-CN gene polymorphism in Vechur and crossbred cattle of Kerala considering its public health importance. Blood samples were collected from 72 Vechur cattle, and 14 Kasargode Dwarf cattle available in the KAU farm and 100 crossbred cattle randomly selected from different parts of Kerala. Genomic DNA was isolated by standard phenol chloroform procedure. Beta casein A1 A2 polymorphism was analysed by Allele Specific Polymerase Chain Reaction (AS-PCR). The genotypic frequencies of A1A1, A1A2 and A2A2 were, respectively, 0, 0.40 and 0.60 in Vechur cattle, 0.32, 0.28 and 0.40 in crossbred cattle and 0, 0.79 and 0.21 in Kasargode cattle. Genotypic frequencies were not found to be in Hardy-Weinberg equilibrium in crossbred cattle while in Vechur and Kasargode cattle frequencies were found to be in equilibrium. The A1 and A2 allele frequency was 0.20 and 0.80 in Vechur cattle, 0.46 and 0.54 in crossbred cattle and 0.39 and 0.61 in Kasargode cattle. Comparison of allele frequencies revealed that there is significant variation in allele frequencies among these three groups of animals. The relationship between β-CN A1/A2 polymorphism with milk yield was also assessed. The average daily milk yield was 1.27±0.05 kg in Vechur cattle. The peak yield of crossbred cattle was 10.71±1.046 kg. The average daily milk yield for A1A2 genotype in Vechur cattle was 1.52±0.08 kg and 1.14±0.04 kg for A1A2 genotype. The t-test showed the difference in the milk yield of the two genotypes was significantly different at 5% level of significance. In crossbred cattle the peak yield (kg) of A1A1 genotype was 14.64±3.181, 8.54±0.194 for A1A2 genotype and 9.09±0.125 for A2A2 genotype. The A1A1 genotype in crossbred cattle showed significantly higher average peak yield compared to other genotypes and difference between A1A2 and A2A2 genotypes were not significantly different. From the present study it can be concluded that selection for enhancing milk production may increase the frequency of harmful A1 allele in our bovine population. So efforts should be taken to enhance the A2 allele with a view of transforming our cattle population capable of producing A2 variant of β-CN which has a global demand. The information generated in this study on the genotypes of Vechur and Kasargode dwarf cattle can be very effectively used for developing a herd/breed of cattle with A2A2 β-CN genotype.ThesisItem Open Access Genetic divergence in rabbits used for breeding in Kerala(Department of Animal Breeding and Genetics, College of Veterinary and Animal Sciences, Mannuthy, 2007) NIsha Valsan; KAU; Bindhu, K AThe genetic divergence among three breeds of rabbit, viz. Newzealand White, Soviet Chinchilla and Grey Giant was studied using microsatellite markers. A set of twelve microsatellite markers were tested, out of which three markers (Sol 03, Sol 33 and Sol 44) were selected based on their polymorphism. The PCR products were separated by denaturing polyacrylamide gel electrophoresis and autoradiographed. The Sol 03 locus was found to be the most polymorphic with fourteen alleles in the pooled population. The values for heterozygosity and PIC in Newzealand White at the Sol 03 locus were recorded as 0.840 and 0.836, in Soviet Chinchilla as 0.766 and 0.764, while in Grey Giant, the heterozygosity and PIC values stood at 0.775 and 0.765, respectively. Eight alleles were detected at the Sol 33 locus. The maximum values for heterozygosity (0.858) and PIC (0.854) were observed in Grey Giant while Newzealand White (0.672 and 0.667, respectively) recorded the lowest. In Soviet Chinchilla, values for heterozygosity and PIC were 0.691 and 0.680 respectively. with mean heterozygosity and PIC values of 0.740 and 0.764. Sol 44 locus revealed four alleles. The highest values for heterozygosity (0.728) and PIC (0.702) at the Sol 44 locus were recorded in Grey Giant, while the lowest (0.567 and 0.477) in Soviet Chinchilla. The heterozygosity and PIC values were 0.586 and 0.502, respectively in Newzealand White. The genetic distance was calculated based on Nei’s formula, and the highest value was noticed between Soviet Chinchilla and Grey Giant (0.6942) while the lowest between Newzealand White and Soviet Chinchilla (0.2022). The dendrogram constructed using POPGENE program grouped Newzealand White and Soviet Chinchilla in one cluster indicating their closer relationship. Grey Giant was found to be the most widely separated breed.ThesisItem Open Access Genetic and phenotypic variations of geographically different goat populations of Kerala(Department of Animal Breeding and Genetics, College of Veterinary and Animal Sciences, Mannuthy, 2007) Jimcy Joseph; KAU; Raghavan, K CGenetic diversity of four geographically different goat populations in Trivandrum, Kottayam, Thrissur and Kozhikode districts in Kerala was analysed based on physical, biometrical traits and microsatellite markers. Based on physical traits, the populations were not very distinct and uniformity was seen with respect to coat colour, horn pattern, presence or absence of tassels or beard and hair pattern. The animals were predominantly horned and short haired with coat colour of white or a combination of white with either black or brown. Majority of animals did not possess tassels or beard. The biometrical traits observed in the present study were body measurements, peak yield and prolificacy. Body weight of adult female goats was predicted using the regression equation based on the power function of chest girth. It was shown that the animals of Trivandrum district had higher values for almost all body measurements and predicted body weight, while the Thrissur population had lowest values for these growth traits. Animals of Kottayam and Kozhikode came in between. Percentage of multiple births was also higher in Trivandrum goat population (68) compared to other populations indicating high prolificacy. Highest peak yield was recorded for Kottayam goat population. Discriminant analysis based on morphometric measurements revealed that the most discriminative variables were head width and body length, followed by shin circumference and rump length. Mahalanobis distance calculated based on morphometric traits indicated that Thrissur and Trivandrum populations were more distant, while least distance was observed between Kottayam and Kozhikode. Discriminant analysis based on body weight, peak yield and prolificacy revealed that only body weight and peak yield variables have significant discriminative capacity. Trivandrum, Kottayam and Kozhikode populations were grouped together in one cluster based on the distance value. Thrissur population was distant from all other populations. Microsatellite analysis revealed that all the five loci were highly polymorphic with five to nineteen alleles in different populations. The total number of alleles, the mean number of alleles per locus, mean heterozygosity and mean polymorphic information content were 51, 10.2, 0.8201 and 0.8104, respectively. The values indicate that the markers can be successfully used to study the variations existing in the populations. Based on Nei’s genetic distance Thrissur and Trivandrum population were grouped together first and then with Kozhikode population, while the Kottayam population formed a unique branch in dendrogram. Unrelated distance values produced by quantitative and molecular measures of variation may be attributed in part to the environmental influences and local selection pressures. Though use of more number of markers may possibly explain the variation encountered in these traits, the present investigation reveals that selection within each population for traits of economic importance like body weight and milk production is the best method to improve the performance of goats of Kerala.ThesisItem Open Access Molecular cloning and characterization of Alpha lactalbumin gene in Vechur cattle(Department of Animal Breeding and Genetics, College of Veterinary and Animal sciences, Mannuthy, 2007) Rajeev, M; KAU; Aravindakshan, T VThe study was undertaken with the objectives of cloning and characterization of the gene encoding the milk protein alpha-lactalbumin (α-LA) of Vechur cow of Kerala. The α-LA is a mammary gland specific protein found in high concentrations in milk of many species and has a role in regulating lactose synthase. Alpha-lactalbumin is homologous with the c-type lysozymes and provides an example of extreme functional divergence in homologous proteins with closely similar structures. The genomic DNA was isolated from blood samples and a 1756 bp fragment of the entire transcriptional unit of the α-LA was amplified by PCR using synthetic oligonucleotide primer pair designed based on the bovine α-LA gene sequence. The gel purified PCR product was ligated in to a T-vector and was transformed by giving heat shock to competent E. coli cells prepared by CaCl2 treatment. The recombinant clones among the transformed cells were identified by Blue–White Screening and the recombinant plasmid carrying the insert gene was isolated from the white clones by a modified SDS-alkaline lysis method. The 1.756 kb α-LA gene insert in the vector was sequenced by the dideoxynucleotide sequencing method with primer walking using an automated DNA sequencer. The sequence was found to be having 99 per cent homology with that of Bos taurus, 98 per cent with that of Yak and 95 per cent with that of sheep α-LA gene. Comparison of the human and Vechur α-LA genes showed identical structural organization and identifies extensive homology within the transcription unit. The exon-intron boundaries in the human α-LA gene occur at the codons of the amino acid residues, Leu-26 (intron 1), Lys-79 (intron 2) and Trp-104 (intron 3). The latter two residues are conserved in both species and also in Bos taurus, whereas Leu-26 is replaced by Trp-26 in the Vechur and bovine proteins. This strict homology in the sites of insertion of introns suggests that the exon-intron organization of these genes was established before the divergence of these species. The positions of the exon-intron boundaries are also conserved as evidenced from similar sizes of the exons. The introns sizes are also comparable except in the case of intron 1, which is much larger in the human gene as a consequence of the insertion of a Alu family repeat sequence. The Vechur α-LA gene has an open reading frame of 426 nucleotides encoding a signal peptide of 19 amino acid residues and a mature protein of 123 amino acid residues with NH2 terminal glutamic acid and COOH- terminal leucine. Alignment of this sequence with bovine counterpart showed that 122 amino acid residues are identical and with human α-LA sequence showed 73 per cent identity. The predicted secondary structure of Vechur α-LA showed that the larger α- helical lobe is formed by the amino- and carboxyl-terminal sections of the polypeptide chain while the smaller lobe, which encompasses a small three stranded antiparallel beta-sheet, and a small irregular structure, is formed by the central section of the polypeptide chain. The predicted tertiary structure of Vechur α-LA also showed high homology with the bovine and human α-LA structures. Overall, the structures of Vechur α-LA was found to be very similar to that of Bos taurus and human reflecting their high degree of amino acid sequence identity. The present study did not reveal any higher degree of structural or functional similarity between Vechur and human α-LA proteins as compared to that of Bos taurus. The superiority of human milk and its high suitability to infants could be due to the higher content of α-LA and might not be attributed to any structural variations of the protein. Since the higher content of α-LA in human milk could be due to the high expression of this gene, further studies may be carried out to find out sequence variations, if any, occur in the regulatory sequences upstream of the gene. Gene expression studies are suggestive as α-LA locus can also be used as a genetic marker to increase milk production in Vechur cattle, as this marker may be directly responsible for increased milk production.ThesisItem Open Access Growth performance of broiler rabbits under 3*3 diallel crossing(Department of Animal Breeding and Genetics, College of Veterinary and Animal Sciences, Mannuthy, 2008) Rojan, P M; KAU; Bindu, K AA complete 3 x 3 diallel crossing was performed to study the growth performance of rabbits belonging to three different breeds viz. White Giant (WG), Soviet Chinchilla (SC) and Grey Giant (GG) at the University rabbit farm, Centre for Advanced Studies in Animal Genetics and Breeding, College of Veterinary and Animal Sciences, Mannuthy, Thrissur. Growth records of F1 progeny were taken at fortnightly interval up to fourteen weeks of age. Bunnies were weaned at four weeks. Effect of genetic and non-genetic factors on various growth and litter traits were analysed. Genetic groups were significant source of variation for body weights from birth to twelfth week. Among purebreds highest mean body weight from birth to fourteenth week were recorded by WG. While WG x GG averaged highest among crossbreds. Individual bunny weights declined gradually as litter size increased. This trend continued till ten weeks of age after which there were no significant difference between different litter groups. Weight of dam at kindling influenced body weights of second to eighth week. Higher bunny weights were recorded for does weighing two to two and a half kilograms. Body weights of bunnies at birth, fourth, sixth and eighth weeks of age were influenced significantly by age of dam at kindling. Season of birth had an influence on birth, fourth and sixth week body weights. Higher individual weaning weights were obtained in cold season. Genetic groups had no significant effect on litter traits and gestation period. Weight of dam had significant influence on litter size and weight at birth and weaning. Litter weight at weaning was influenced significantly by the age of dam. Season of birth had an influence on gestation period, litter size at birth and weaning and litter weight at birth. Among purebreds, SC recorded the highest mortality. Highest pre and post-weaning mortality was recorded for SC x WG and WG x GG, respectively among crossbreds. Pre-weaning mortality was high in cold season while, in hot season maximum of post-weaning mortality was recorded. Heritability estimates of weight at weaning, twelfth and fourteenth week were 0.380±0.239, 0.657±0.379 and 0.727±0.407, respectively. Highly positive General Combining Ability (GCA) effects of WG indicated predominant additive gene action for expression of pre and post-weaning body weights. Higher Specific Combining Ability (SCA) was recorded for WG x GG cross at slaughter age of three months. The maternal effects were highest for GG from sixth to fourteenth week and highest in SC during early periods. As per the findings of the study it would be beneficial to use WG male on GG female so that the higher GCA effect of WG breed, maternal ability of GG as well as higher estimates of SCA of particular WG x GG cross could be exploited.