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Assam Agricultural University, Jorhat

Assam Agricultural University is the first institution of its kind in the whole of North-Eastern Region of India. The main goal of this institution is to produce globally competitive human resources in farm sectorand to carry out research in both conventional and frontier areas for production optimization as well as to disseminate the generated technologies as public good for benefitting the food growers/produces and traders involved in the sector while emphasizing on sustainability, equity and overall food security at household level. Genesis of AAU - The embryo of the agricultural research in the state of Assam was formed as early as 1897 with the establishment of the Upper Shillong Experimental Farm (now in Meghalaya) just after about a decade of creation of the agricultural department in 1882. However, the seeds of agricultural research in today’s Assam were sown in the dawn of the twentieth century with the establishment of two Rice Experimental Stations, one at Karimganj in Barak valley in 1913 and the other at Titabor in Brahmaputra valley in 1923. Subsequent to these research stations, a number of research stations were established to conduct research on important crops, more specifically, jute, pulses, oilseeds etc. The Assam Agricultural University was established on April 1, 1969 under The Assam Agricultural University Act, 1968’ with the mandate of imparting farm education, conduct research in agriculture and allied sciences and to effectively disseminate technologies so generated. Before establishment of the University, there were altogether 17 research schemes/projects in the state under the Department of Agriculture. By July 1973, all the research projects and 10 experimental farms were transferred by the Government of Assam to the AAU which already inherited the College of Agriculture and its farm at Barbheta, Jorhat and College of Veterinary Sciences at Khanapara, Guwahati. Subsequently, College of Community Science at Jorhat (1969), College of Fisheries at Raha (1988), Biswanath College of Agriculture at Biswanath Chariali (1988) and Lakhimpur College of Veterinary Science at Joyhing, North Lakhimpur (1988) were established. Presently, the University has three more colleges under its jurisdiction, viz., Sarat Chandra Singha College of Agriculture, Chapar, College of Horticulture, Nalbari & College of Sericulture, Titabar. Similarly, few more regional research stations at Shillongani, Diphu, Gossaigaon, Lakhimpur; and commodity research stations at Kahikuchi, Buralikson, Tinsukia, Kharua, Burnihat and Mandira were added to generate location and crop specific agricultural production packages.

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2016 - 20192
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Subject: Veterinary Microbiology × Author: SARMAH, HIRAMONI × End date: 2019 × Type: Thesis ×
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    ThesisItemOpen Access
    DEVELOPMENT OF A SUITABLE VACCINE FORMULATION AGAINST TYPE A Clostridium perfringens ASSOCIATED NECROTIC ENTERITIS IN BROILER CHICKEN
    (College of Veterinary Science, Assam Agricultural University, Khanapara, Guwahati, 2019-07) SARMAH, HIRAMONI; Sharma, Rajeev Kumar
    Necrotic enteritis (NE) is one of the most clinically dramatic and important bacterial disease of poultry industry. It has a great negative impact on broiler industry due to production losses, increased mortality, increased feed conversion ratio. The cost of NE worldwide was estimated to 2 billion dollars per year with 1% daily mortality. Most common age of outbreaks of NE in broiler flocks raised on litter are between the second and fifth week of age. NE in broiler chicken is commonly associated with Clostridium perfringens toxin type A, while involvement of type C is very rare. The study was undertaken to develop a suitable vaccine preparation against C. perfringens type A associated NE for broiler chicken. During the study clinical samples. viz., intestinal content, intestinal scrapings from broilers died of suspected form of NE and faecal swabs from live affected birds with clinical symptoms suggestive of NE were screened for C. perfringens. A total of 26 repository isolates of C.perfringens maintained in Department of Microbiology, College of Veterinary Science, Khanapara were also considered for the present study. All the isolated C. perfringens recovered from NE affected broiler birds along with the repository were characterized with respect to the toxin types, detection of gene(s) associated with virulence and secretory protein, pathogenicity for mice, release of toxins and secretory proteins in cell free supernatant and resistance patterns towards antimicrobial agents. The detailed characterization was carried out with an idea to identify a suitable vaccine candidate for the development of vaccine preparations against NE in broiler chicken. Clinical samples, comprising of intestinal scrapings (42), intestinal contents (30) were collected from 72 dead broiler chickens with suspected form of necrotic enteritis. Another 23 faecal samples were collected from an equal no. of clinically affected live broiler birds by swabbing. A total of 41 isolates were identified as toxin type A, only 10 isolates isolates isolates isolates isolates isolates isolates isolates isolates exhibited additional virulent genes viz netB, tpeL and gapC genes either alone or in combination. All the eluted amplified PCR products of target genes with respective band sizes were confirmed by DNA sequencing. All total of 10 isolates of C. perfringens type A positive for netB alone (5), and netB with tpeL and gapC (5), were subjected to mouse pathogenicity trial. The mouse pathogenicity trial revealed variable pathogenicity, producing clinical symptoms in 21 inoculated mice within 72 hrs of observation, while 17 of the clinically affected mice were succumbed to death. The highest mortality was observed in group of mice inoculated with S8. On SDS-PAGE analysis cell free supernatant of S8 could exhibit highest 16 different visible bands with MW, ranging from 12 to 250 kDa. The four additional virulence associated proteins, NetB (33 kDa), GPD (40 kDa), α- toxin (43 kDa) and tpeL(180 kDa) were also distinctly visible. On immunoblotting clear immune dominant antigenic proteins identified as netB (33 kDa), GPD (40 kDa), alpha (43 kDa) and tpeL (180 kDa). were observed in cell free supernatant of S8 and other few strain. On antimicrobial resistance profiling highest resistance pattern was observed against ciprofloxacin (80.0%), followed by norfloxacin and tetracycline (60.0% each), gentamicin (30.0%) and levofloxacin (20.0%). Gatifloxacin, cefmetazole,clindamycin, metronidazole, and tigecycline were found to be effective against all the isolates. After selection of a suitable strain of C. perfringens type A, six different vaccine formulations, i.e., non-adjuvanted crude toxoid (I), non-adjuvanted crude toxoid with bacterin (II), non-adjuvanted crude toxoid with sonicated supernatant (SS) and bacterin (III), adjuvanted crude toxoid (IV), adjuvanted crude toxoid with bacterin (V) and adjuvanted crude toxoid with SS and bacterin (VI) were prepared. Comparative evaluation of the six vaccine formulations was carried out in respective groups of broiler birds, with respect to their serum antibody titer. Among the vaccine formulations, combination of crude toxoid, bacterin and SS was found to be superior in respect to the mean serum antibody titer in vaccinated bird (group VI), throughout the study period throughout study period. The passive mouse protection study could reveal that the pooled immunized serum samples of 21st, and 28th day could protect the mice with the challenge with homologous strain of C. perfringens.
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    ThesisItemOpen Access
    MOLECULAR AND BIOLOGICAL CHARACTERIZATION OF WILD STRAIN OF DUCK PLAGUE VIRUS
    (Assam Agricultural University, Khanapara, Guwahati, 2016-07) SARMAH, HIRAMONI; DAS, S. K.
    Duck plague or duck viral enteritis is an acute and contagious viral disease of ducks, geese swan and other waterfowl. The disease is responsible for significant economic losses in duck husbandry due to decrease in egg production, condemnation and mortality in duck. The present study was undertaken to study the molecular and biological characterization of wild strains of duck plague virus. In the present study 6 wild strains of DPV (DP/As-Km/0010, DP/As-Nal/0012, DP/As-Km/0016, DP/As-Km/0019, DP/As-By/0022, DP/As-Km/0025) were revived in ducklings. All the inoculated ducklings developed distinct clinical signs like nasal discharge, lacrimation, pested eyelids, greenish watery diarrhea, soiled vents and sometimes sudden death etc. Post mortem examination revealed gross lesions in brain, oesophagus, liver, spleen, heart, bursa of Fabricious and in intestine. Presence of viral nucleic acid was detected by PCR and detection of duck plague virus antigen in post mortem samples was done with indirect FAT. All the isolates revived in ducklings were further propagated in DEF upto 5th serial passage. The clear CPE was observed from 1st passage onwards. On the basis of DID50 and TCID50, a VV strain of DPV was selected for further study. DID50 of DP/As-Km/0019 was found to be 10-2 and DID50 in case of DP/As-By/0022 and DP/As-Km/0025 was 10-1. Highest TCID50 was found to be 106.33 in case of DP/As-Km/0019. On the basis of these parameters (DID50, TCID50). The strain DP/As-Km/0019 was selected as VV strain of DPV. The pathodynamics of the VV strain was studied by using mean clinical and pathological scores and virus excretion pattern in blood and other clinical samples like tracheal swab and cloacal swab, nasal and ocular swab. Highest mean pathological score was observed in Liver and oesophagus (2.33±0.51) and lowest was observed in thymus and bursa (1.00±0.00).Molecular characterization of selected VV strain of DPV was done by sequencing two genes (UL30, US10) from different region of the virus. Phylogenetic analysis showed close relation with other isolates of DPV and vaccine strain. VNT50 titre of VV strain of DPV (DP/As-Km/0019) was found to be 1:223 which is similar to VNT50 of the vaccine strain and for other moderate virulent strains (DP/As-By/0022 and DP/As-Km/0025), VNT50 was 1:188 and 1:112 respectively. The selected VV strain of duck plague virus was adapted in 9-11 days old embryonated chicken eggs. Different changes like thickening of CAM with extensive haemorrhages, Haemorrhage and congestion throughout the body of infected embryos were observed from 3rd passage onwards. The chicken embryo adapted VV wild strain of DPV was again adapted and propagated in the CEF upto 10th serial passage. The most common CPEs were rounding of cell, vaculation in the cell, syncytia formation and finally detachment of cell monolayer which was observed from 3rd passage onwards.