Jaspal KaurWaris, Mohammad2023-12-122023-12-122022Waris, Mohammad (2022). Mapping of stripe rust resistance gene(s) in recombinant inbred lines of Triticum aestivum L. (Unpublished Ph.D. Dissertation). Punjab Agricultural University, Ludhiana, Punjab, India.https://krishikosh.egranth.ac.in/handle/1/5810202781Stripe rust caused by Puccinia striiformis f.sp. tritici (Pst) has been identified as the most devastating wheat rust disease and is considered one of the major constraints on wheat (Triticum aestivum L.). The pathogen's polycyclic and airborne nature causes the emergence of novel pathotypes, resulting in the breakdown of many resistance genes and considerable losses in grain yield and quality. To combat the emergence of novel pathotypes, breeders and plant pathologists are constantly on the lookout for stable and long-lasting sources of resistance. Thus, this research work was designed to find novel sources of resistance. A 441 germplasm entries were evaluated, first for their seedling response against the most prevalent pathotypes of Puccinia striiformis f.sp. tritici (238S119, 110S119, and 46S119). Based on infection-type data, out of the 441 lines, 30 lines were found highly resistant to all three pathotypes tested, and 27 lines were highly susceptible. The same entries were also tested for adult plant resistance against stripe rust under field conditions at Ludhiana and Gurdaspur during 2019-21. From the field response against stripe rust infection, i.e., based on final rust severity (FRS) and area under disease progress curve (AUDPC) for all three years at Ludhiana and Gurdaspur, the lines were categorized into highly resistant, resistant, moderately resistant, moderately susceptible, and susceptible. To see the performance of genotypes in multi-environments the data was subjected to GGE biplot analysis. Wheat genotypes were inconsistent in terms of stripe rust reaction at the tested locations. IC111939 (G1) was found to be the "ideal" genotype in both environments. Gene postulation in the 45 lines which shows both all-stage resistance as well as adult plant resistance was done by using 13 known YR geneassociated markers pertaining to 5 Yr genes (Yr5, Yr10, Yr15, Yr24, and Yr26). Yr5 presence was detected in sixteen lines with two linked markers, i.e., Xwmc175 and Xgwm120; Yr10 was detected in ten lines linked with the marker Xpsp3000; Yr15 was detected in fourteen lines with two linked markers, i.e., Xgwm413 and Xgwm273; Yr24/26 was detected in 15 lines with two linked markers, namely Xbarc181 and Xbarc187. For mapping of stripe rust resistance genes in RILs of bread whe at, four F5:6 RIL populations (IC530087 x PBW621, IC530078 x PBW621, IC553914 x PBW621, and IC529094 x PBW621) were tested with stripe rust pathotypes at the seedling stage (238S119, 46S119, and 110S119) as well as at the adult plant stage against a mixture of pathotypes. The same amounts of DNA from ten resistant (R) and ten susceptible (S) lines from each of the four populations were used to make the R and S bulks. A BSA-based 90K SNP array was performed, and 81,423 SNPs were reduced to 71,991 KASP SNPs. The polymorphic SNPs were then used for the mapping of stripe rust resistance genes in all the RILs. A total of 66 KASP markers were developed from the sequencing data. Out of 66 KASP markers, 35 were found to be polymorphic between the parents, and 19 were validated on RIL populations. Mapping using these 19 markers led to the identification of five major QTLs, qYr-pau1A_P5, qYr-pau-5B_P5At, qYr-pau-5A-p11, qYr-pau-6A, qYr-pau-2B_P7, and one minor QTL, qYrpau-P9-3b, on chromosomes 1A, 5B, 5A, 6A, 2B, and 3B, respectively. KASP markers associated with these genes can be directly utilized for marker-assisted breeding in wheat.EnglishThesis